PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00138844001
Common NameGSBRNA2T00138844001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 232aa    MW: 25396.6 Da    PI: 4.6482
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00138844001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.91.4e-42541531100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+d+++s+vyeA ar+rdPvyG++g i +lq+q+++l
  GSBRNA2T00138844001  54 PCAACKILRRRCADKCVLAPYFPPTDPAKFIIAHRVFGASNIIKFLQELPESQRTDTVNSMVYEAGARMRDPVYGCAGAIYHLQKQVCEL 143
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +a+la+++ e
  GSBRNA2T00138844001 144 QAQLAKTQVE 153
                          *****99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.0353154IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-4254151IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLKMETFGGI SVAAPTSSAV AKTTTPANSA SPTSSPPPPL SPEQPQQQTV VLSPCAACKI  60
LRRRCADKCV LAPYFPPTDP AKFIIAHRVF GASNIIKFLQ ELPESQRTDT VNSMVYEAGA  120
RMRDPVYGCA GAIYHLQKQV CELQAQLAKT QVELVSMQLQ RSDLLELLHK TEQANLSEQQ  180
EGQQNMSFES SFESGDEFIS SHDEVTNDLG FLDDNNNNNN SSMLWSDPLW T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00138844001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2409850.0AC240985.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008O16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133875.11e-174PREDICTED: LOB domain-containing protein 11-like
SwissprotQ9SK081e-122LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A078D2D41e-174A0A078D2D4_BRANA; BnaA03g22160D protein
TrEMBLM4C8G31e-174M4C8G3_BRARP; Uncharacterized protein
STRINGBra000491.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-104LOB domain-containing protein 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]